The caspase family of cysteine proteases was discovered following a search of human cDNA libraries for sequences homologous to ced -3, a cell death gene described in the nematode worm C
elegans
The first mammalian homologue of ced-3 to be identified was ICE (interleukin-1α converting enzyme)
Subsequently, numerous mammalian ced -3 homologues have been discovered and have each been given a variety of names
To achieve consistency, the term “caspase” was adopted as a root name for all family members
The name reflects the catalytic properties of these enzymes, the “c” denotes their cysteine protease mechanism and “aspase” refers to their ability to cleave after aspartic acid residues
These proteases are expressed as inactive proenzymes, which are proteolytically cleaved into large and small subunits, which form the active enzyme
Active caspase-3 consists of 17 and 12 kDa subunits which are derived from a 32 kDa proenzyme (pro-caspase-3)
Activecaspase-3 has been shown to cleave PARP [poly (ADP ribose) polymerase], an enzyme that is involved in DNA repair and genomic maintenance
Proteolysis of the 116 kDa intact form of PARP into 85 and 25 kDa subunits results in loss of normal PARP function
The cleavage site in PARP is C-terminal to Asp-216
The upstream sequence of the PARP cleavage site, DEVD (Asp-Glu-Val-Asp), is utilized as a basis for the highly specific caspase-3 substrate Ac(N-acetyle)-DEVD-AFC (7-amino-4-trifluoromethylcoumarin)
Caspase-3 cleaves the tetrapeptide between D and AFC, thus releasing the fluorogenic AFC which can be quantified by U.V
spectrofluorometry
When coupled to an aldehyde group (CHO), the DEVD peptide functions as a potent inhibitor of caspase-3 activity and can be used to block caspase-3 mediated cleavage of Ac-DEVD-AFC
These tetrapeptide substrates can be used to identify and quantitate caspase-3 activity in apoptotic cell lysates